The LAD-WEKA implementation is based on the following papers:

• An Implementation of Logical Analysis of Data
  Boros, E., P.L. Hammer, T. Ibaraki, A. Kogan, E. Mayoraz, I. Muchnik.
  IEEE Transactions on Knowledge and Data Engineering, vol 12(2), 292-306, 2000
• Maximum Patterns in Datasets
  Bonates, T.O., P.L. Hammer, A. Kogan
  Discrete Applied Mathematics, vol. 156(6), 846-861, 2008.
• Classificação Supervisionada de Dados via Otimização e Funções Booleanas (in Portuguese) [Download]
  Gomes, V.S.D., T. O. Bonates
  Anais do II Workshop Técnico-Científico de Computação, p.21-27, Mossoró, RN, Brazil, 2011.

A more comprehensive list of LAD-related publications is given below. This list is still under construction and will continue to be updated in the near future.

• A New Column Generation algorithm for Logical Analysis of Data
  P. Hansen, C. Meyer
  Annals of Operations Research, p. 1-35, 2011.
  
• Large Margin Rule-Based Classifiers
  T.O Bonates
  Wiley Encyclopedia of Operations Research and Management Science, 2010.
  
• Molecular Stratification of Clear Cell Renal Cell Carcinoma Using Consensus Clustering Reveals Distinct Subtypes and Survival Patterns
  A. R. Brannon, A. Reddy, M. Seiler, R. Pruthi, E. Wallen, B. Ljungberg, H. Zhao, J. D. Brooks, S. Ganesan, G. Bhanot, W. K. Rathmell
  Genes and Cancer, 2010
  
• Predicting Cancer Survival Using Expression Patterns
  A. Reddy, L.-P. Kronek, A. R. Brannon, M. Seiler, S. Ganesan, W. K. Rathmell, G. Bhanot
  Medical Biostatistics for Complex Diseases, 2010
  
• A Predictor for Survival in Intermediate Grade Clear Cell Renal Cell Carcinoma
  A. Reddy, A. R. Brannon, M. Seiler, J. Irgon, B. Ljungberg, H. Zhao, J. D. Brooks, W. K. Rathmell, S. Ganesan, G. Bhanot
  The 2009 International Conference on Bioinformatics & Computational Biology, 2009.
  
• Maximum Patterns in Datasets
  Bonates, T.O., P.L. Hammer, A. Kogan
  Discrete Applied Mathematics, vol. 156(6), 846-861, 2008.
  
  http://dx.doi.org/10.1016/j.dam.2007.06.004
  
• Logical Analysis of Data (LAD) model for the early diagnosis of acute ischemic stroke
  Reddy A., H. Wang, H. Yu, T. Bonates, V. Gulabani, J. Azok, G. Hoehn, P. Hammer, A. Baird, K. Li
  BMC Medical Informatics and Decision Making, 8:30, 2008.
  
  http://www.biomedcentral.com/1472-6947/8/30
  
• Logical analysis of data - the vision of Peter L. Hammer
  G. Alexe, Sorin Alexe, T.O. Bonates, A. Kogan
  Annals of Mathematics and Artificial Intelligence, vol. 49, 265-312, 2007.
  
  http://www.springerlink.com/content/pm77w251qr677835
  
• Logical Analysis of Data -- An Overview: From Combinatorial Optimization to Medical Applications
  Hammer, P.L., T.O. Bonates
  Annals of Operations Research, 148:203-225, 2006.
  
  http://www.springerlink.com/content/n7382660l6540t80
  
• Breast Cancer Prognosis by Combinatorial Analysis of Gene Expression Data
  G. Alexe, S. Alexe, D.E. Axelrod, T.O. Bonates, I.I. Lozina, M. Reiss, P.L. Hammer
  
  Breast Cancer Research, 2006, 8:R41.
  http://breast-cancer-research.com/content/8/4/R41
  
• Spanned Patterns for the Logical Analysis of Data
  G. Alexe, P.L. Hammer
  Discrete Applied Mathematics, v. 154 (7), p. 1039-1049, 2006.
  
• Accelerated Algorithm for Pattern Detection in Logical Analysis of Data
  S. Alexe, P.L. Hammer
  Discrete Applied Mathematics, v. 154(7), p. 1050-1063, 2006.
  
• Ovarian Cancer Detection by Logical Analysis of Proteomic Data
  G. Alexe, S. Alexe, L.A. Liotta, E. Petricoin, M. Reiss, P.L. Hammer
  Proteomics, v. 4(3), p. 766-783, 2004.
  
• Coronary Risk Prediction by Logical Analysis of Data
  S. Alexe, E. Blackstone, P.L. Hammer, H. Ishwaran, M.S. Lauer, C.E. Pothier Snader
  Annals of Operations Research, v. 119 (1), p. 15-42, 2003.
  
• An Implementation of Logical Analysis of Data
  E. Boros, P.L. Hammer, T. Ibaraki, A. Kogan, E. Mayoraz, I. Muchnik
  IEEE Transactions on Knowledge and Data Engineering, 12(2), 292-306, 2000.
  
• Logical Analysis of Numerical Data
  Boros, E. and Hammer, P.L. and T. Ibaraki, A. Kogan
  Mathematical Programming, v. 79(1), p. 163-190, 1997.